Jeany-optimization¶
Parameter Optimization Report¶
Project description: Sample description of the project in this report. Newlines can be added by leaving a blank line. If you want to insert things in "quotes", you will need the escape character \
Date: 2022-10-23
Config: ./param_optimization/jeany_opt_config.yml
Notebook version: 0.1
List of datasets¶
Optimization keys: ['Matrix', 'RF']
Biological key: Condition
Batch key: ['Matrix'] (data with different batch_keys will be processed separately)
| Unnamed: 0 | Code | Matrix | Mode | step size | Attenuator | RF | Voltage | Temperature | Condition | Unnamed: 9 | datasetId | datasetName | group | submitter | PI | organism | organismPart | condition | growthConditions | ionisationSource | maldiMatrix | analyzer | resPower400 | polarity | uploadDateTime | FDR@10% | database | opticalImage | row | col | slide | Batch | generated-replicate-name | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | 0 | A1-2 | DAN | negative | 25 | 32 | 50 | 3.250000 | 250 | Control | nan | 2022-09-16_20h35m58s | 22-01-24_HTprometex_A1-2_A32_ss25_RF50_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:35:58.047856 | 33 | HMDB - v4 | No optical image | A | 1 | 2 | DAN | 2 |
| 1 | 1 | A1-3 | DAN | negative | 25 | 30 | 50 | 3.250000 | 250 | Control | nan | 2022-09-16_20h34m40s | 22-01-24_HTprometex_A1-3_A30_ss25_RF50_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:34:41.061670 | 31 | HMDB - v4 | No optical image | A | 1 | 3 | DAN | 3 |
| 2 | 2 | A1-4 | DAN | negative | 25 | 28 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_20h31m43s | 22-01-24_HTprometex_A1-4_A28_ss25_RF70_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:31:43.185695 | 39 | CoreMetabolome - v3 | No optical image | A | 1 | 4 | DAN | 4 |
| 3 | 3 | A1-5 | DAN | negative | 25 | 29 | 50 | 3.250000 | 250 | Control | nan | 2022-09-16_20h32m14s | 22-01-24_HTprometex_A1-5_A29_ss25_RF50_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:32:14.444036 | 41 | HMDB - v4 | No optical image | A | 1 | 5 | DAN | 5 |
| 4 | 4 | A1-6 | DAN | negative | 25 | 28 | 50 | 3.250000 | 250 | Control | nan | 2022-09-16_20h31m08s | 22-01-24_HTprometex_A1-6_A28_ss25_RF50_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:31:08.957568 | 44 | CoreMetabolome - v3 | No optical image | A | 1 | 6 | DAN | 6 |
| 5 | 5 | A1-7 | DAN | negative | 25 | 29 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_20h32m44s | 22-01-24_HTprometex_A1-7_A29_ss25_RF70_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:32:44.658113 | 55 | HMDB - v4 | No optical image | A | 1 | 7 | DAN | 7 |
| 6 | 6 | A2-1 | DAN | negative | 25 | 30 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_20h35m15s | 22-01-24_HTprometex_A2-1_A30_ss25_RF70_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:35:15.387122 | 31 | HMDB - v4 | No optical image | A | 2 | 1 | DAN | 1 |
| 7 | 7 | A2-2 | DAN | negative | 25 | 32 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_20h36m39s | 22-01-24_HTprometex_A2-2_A32_ss25_RF70_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:36:39.057948 | 25 | HMDB - v4 | No optical image | A | 2 | 2 | DAN | 2 |
| 8 | 8 | A2-4 | DAN | negative | 25 | 29 | 100 | 3.250000 | 250 | Control | nan | 2022-09-16_20h34m07s | 22-01-24_HTprometex_A2-4_A29_ss25_RF100_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:34:07.953872 | 34 | HMDB - v4 | No optical image | A | 2 | 4 | DAN | 4 |
| 9 | 9 | A2-5 | DAN | negative | 25 | 29 | 70 | 3.100000 | 250 | Control | nan | 2022-09-16_20h37m26s | 22-01-24_HTprometex_A2-5_A29_ss25_RF70_CT250_V3.1_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:37:27.024225 | 33 | HMDB - v4 | No optical image | A | 2 | 5 | DAN | 5 |
| 10 | 10 | A2-6 | DAN | negative | 25 | 29 | 70 | 3.250000 | 350 | Control | nan | 2022-09-16_20h38m00s | 22-01-24_HTprometex_A2-6_A29_ss25_RF70_CT350_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:38:00.820960 | 37 | HMDB - v4 | No optical image | A | 2 | 6 | DAN | 6 |
| 11 | 11 | B1-1 | DAN | negative | 25 | 28 | 50 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h38m56s | 22-01-24_HTprometex_B1-1_A28_ss25_RF50_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:38:56.642346 | 71 | CoreMetabolome - v3 | No optical image | B | 1 | 1 | DAN | 1 |
| 12 | 12 | B1-2 | DAN | negative | 25 | 30 | 50 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h42m27s | 22-01-24_HTprometex_B1-2_A30_ss25_RF50_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:42:27.369903 | 39 | CoreMetabolome - v3 | No optical image | B | 1 | 2 | DAN | 2 |
| 13 | 13 | B1-3 | DAN | negative | 25 | 32 | 50 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h43m36s | 22-01-24_HTprometex_B1-3_A32_ss25_RF50_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:43:36.279764 | 28 | HMDB - v4 | No optical image | B | 1 | 3 | DAN | 3 |
| 14 | 14 | B1-4 | DAN | negative | 25 | 29 | 50 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h40m37s | 22-01-24_HTprometex_B1-4_A29_ss25_RF50_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:40:37.238703 | 45 | HMDB - v4 | No optical image | B | 1 | 4 | DAN | 4 |
| 15 | 15 | B1-5 | DAN | negative | 25 | 29 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h41m42s | 22-01-24_HTprometex_B1-5_A29_ss25_RF70_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:41:42.693951 | 49 | CoreMetabolome - v3 | No optical image | B | 1 | 5 | DAN | 5 |
| 16 | 16 | B1-6 | DAN | negative | 25 | 28 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h39m33s | 22-01-24_HTprometex_B1-6_A28_ss25_RF70_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:39:33.140430 | 37 | HMDB - v4 | No optical image | B | 1 | 6 | DAN | 6 |
| 17 | 17 | B1-7 | DAN | negative | 25 | 30 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h43m04s | 22-01-24_HTprometex_B1-7_A30_ss25_RF70_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:43:04.685568 | 37 | HMDB - v4 | No optical image | B | 1 | 7 | DAN | 7 |
| 18 | 18 | B1-8 | DAN | negative | 25 | 32 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h44m03s | 22-01-24_HTprometex_B1-8_A32_ss25_RF70_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:44:03.922941 | 22 | HMDB - v4 | No optical image | B | 1 | 8 | DAN | 8 |
| 19 | 19 | B1-9 | DAN | negative | 25 | 28 | 100 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h40m04s | 22-01-24_HTprometex_B1-9_A28_ss25_RF100_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:40:04.298521 | 28 | CoreMetabolome - v3 | No optical image | B | 1 | 9 | DAN | 9 |
| 20 | 20 | B2-1 | DAN | negative | 25 | 29 | 100 | 3.250000 | 250 | 2DG | nan | 2022-09-16_21h50m57s | 22-01-24_HTprometex_B2-1_A29_ss25_RF100_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T19:50:58.108000 | 43 | HMDB - v4 | No optical image | B | 2 | 1 | DAN | 1 |
| 21 | 21 | B2-2 | DAN | negative | 25 | 30 | 100 | 3.250000 | 250 | 2DG | nan | 2022-09-16_21h52m20s | 22-01-24_HTprometex_B2-2_A30_ss25_RF100_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T21:52:20.184673 | 26 | HMDB - v4 | No optical image | B | 2 | 2 | DAN | 2 |
| 22 | 22 | B2-3 | DAN | negative | 25 | 32 | 100 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h46m07s | 22-01-24_HTprometex_B2-3_A32_ss25_RF100_CT250_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:46:07.406460 | 24 | CoreMetabolome - v3 | No optical image | B | 2 | 3 | DAN | 3 |
| 23 | 23 | B2-4 | DAN | negative | 25 | 29 | 70 | 3.100000 | 250 | 2DG | nan | 2022-09-16_20h44m32s | 22-01-24_HTprometex_B2-4_A29_ss25_RF70_CT250_V3.1_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:44:32.526255 | 29 | HMDB - v4 | No optical image | B | 2 | 4 | DAN | 4 |
| 24 | 24 | B2-5 | DAN | negative | 25 | 29 | 70 | 3.250000 | 350 | 2DG | nan | 2022-09-16_20h45m15s | 22-01-24_HTprometex_B2-5_A29_ss25_RF70_CT350_V3.25_25x25_DANneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DAN | Orbitrap | 98995 | negative | 2022-09-16T20:45:15.350536 | 35 | HMDB - v4 | No optical image | B | 2 | 5 | DAN | 5 |
| 25 | 25 | E1-4 | DHB | positive | 25 | 26 | 50 | 3.000000 | 250 | Control | nan | 2022-09-16_21h33m04s | 22-01-25_HTprometex_E1-4_A26_ss25_RF50_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:33:04.408889 | 7 | HMDB - v4 | No optical image | E | 1 | 4 | DHB | 4 |
| 26 | 26 | E1-5 | DHB | positive | 25 | 28 | 50 | 3.000000 | 250 | Control | nan | 2022-09-16_21h33m35s | 22-01-25_HTprometex_E1-5_A28_ss25_RF50_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:33:35.836922 | 17 | CoreMetabolome - v3 | No optical image | E | 1 | 5 | DHB | 5 |
| 27 | 27 | E1-6 | DHB | positive | 25 | 30 | 50 | 3.000000 | 250 | Control | nan | 2022-09-16_21h34m06s | 22-01-25_HTprometex_E1-6_A30_ss25_RF50_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:34:06.497740 | 144 | CoreMetabolome - v3 | No optical image | E | 1 | 6 | DHB | 6 |
| 28 | 28 | E1-7 | DHB | positive | 25 | 32 | 50 | 3.000000 | 250 | Control | nan | 2022-09-16_21h34m35s | 22-01-25_HTprometex_E1-7_A32_ss25_RF50_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:34:35.253452 | 152 | CoreMetabolome - v3 | No optical image | E | 1 | 7 | DHB | 7 |
| 29 | 29 | E1-8 | DHB | positive | 25 | 32 | 70 | 3.000000 | 250 | Control | nan | 2022-09-16_21h35m13s | 22-01-25_HTprometex_E1-8_A32_ss25_RF70_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:35:13.133331 | 179 | CoreMetabolome - v3 | No optical image | E | 1 | 8 | DHB | 8 |
| 30 | 30 | E1-9 | DHB | positive | 25 | 32 | 100 | 3.000000 | 250 | Control | nan | 2022-09-16_21h36m11s | 22-01-25_HTprometex_E1-9_A32_ss25_RF100_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:36:11.140254 | 203 | CoreMetabolome - v3 | No optical image | E | 1 | 9 | DHB | 9 |
| 31 | 31 | E2-1 | DHB | positive | 25 | 30 | 70 | 3.000000 | 250 | Control | nan | 2022-09-16_21h36m41s | 22-01-25_HTprometex_E2-1_A30_ss25_RF70_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:36:41.153593 | 155 | CoreMetabolome - v3 | No optical image | E | 2 | 1 | DHB | 1 |
| 32 | 32 | E2-2 | DHB | positive | 25 | 30 | 100 | 3.000000 | 250 | Control | nan | 2022-09-16_21h40m47s | 22-01-25_HTprometex_E2-2_A30_ss25_RF100_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:40:47.841281 | 111 | CoreMetabolome - v3 | No optical image | E | 2 | 2 | DHB | 2 |
| 33 | 33 | E2-4 | DHB | positive | 25 | 32 | 100 | 3.250000 | 250 | Control | nan | 2022-09-16_21h43m34s | 22-01-25_HTprometex_E2-4_A32_ss25_RF100_CT250_V3.25_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:43:34.511524 | 234 | CoreMetabolome - v3 | No optical image | E | 2 | 4 | DHB | 4 |
| 34 | 34 | E2-5 | DHB | positive | 25 | 32 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_21h42m18s | 22-01-25_HTprometex_E2-5_A32_ss25_RF70_CT250_V3.25_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:42:18.432739 | 176 | CoreMetabolome - v3 | No optical image | E | 2 | 5 | DHB | 5 |
| 35 | 35 | E2-7 | DHB | positive | 25 | 32 | 70 | 3.250000 | 350 | Control | nan | 2022-09-16_21h43m02s | 22-01-25_HTprometex_E2-7_A32_ss25_RF70_CT350_V3.25_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:43:02.356436 | 250 | CoreMetabolome - v3 | No optical image | E | 2 | 7 | DHB | 7 |
| 36 | 36 | D1-1 | DHB | positive | 25 | 26 | 50 | 3.000000 | 250 | 2DG | nan | 2022-09-16_21h28m36s | 22-01-25_HTprometex_D1-1_A26_ss25_RF50_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:28:36.704879 | 75 | CoreMetabolome - v3 | No optical image | D | 1 | 1 | DHB | 1 |
| 37 | 37 | D1-2 | DHB | positive | 25 | 28 | 50 | 3.000000 | 250 | 2DG | nan | 2022-09-16_21h29m12s | 22-01-25_HTprometex_D1-2_A28_ss25_RF50_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:29:12.904548 | 123 | CoreMetabolome - v3 | No optical image | D | 1 | 2 | DHB | 2 |
| 38 | 38 | D1-3 | DHB | positive | 25 | 30 | 50 | 3.000000 | 250 | 2DG | nan | 2022-09-16_21h29m42s | 22-01-25_HTprometex_D1-3_A30_ss25_RF50_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:29:42.599220 | 144 | CoreMetabolome - v3 | No optical image | D | 1 | 3 | DHB | 3 |
| 39 | 39 | D1-4 | DHB | positive | 25 | 32 | 50 | 3.000000 | 250 | 2DG | nan | 2022-09-16_21h30m14s | 22-01-25_HTprometex_D1-4_A32_ss25_RF50_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:30:14.487639 | 207 | CoreMetabolome - v3 | No optical image | D | 1 | 4 | DHB | 4 |
| 40 | 40 | D1-5 | DHB | positive | 25 | 32 | 70 | 3.000000 | 250 | 2DG | nan | 2022-09-16_21h30m44s | 22-01-25_HTprometex_D1-5_A32_ss25_RF70_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:30:44.388626 | 249 | CoreMetabolome - v3 | No optical image | D | 1 | 5 | DHB | 5 |
| 41 | 41 | D1-7 | DHB | positive | 25 | 32 | 100 | 3.000000 | 250 | 2DG | nan | 2022-09-16_21h31m16s | 22-01-25_HTprometex_D1-7_A32_ss25_RF100_CT250_V3_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:31:16.516574 | 216 | CoreMetabolome - v3 | No optical image | D | 1 | 7 | DHB | 7 |
| 42 | 42 | D2-1 | DHB | positive | 25 | 32 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_21h31m49s | 22-01-25_HTprometex_D2-1_A32_ss25_RF70_CT250_V3.25_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:31:49.789107 | 265 | CoreMetabolome - v3 | No optical image | D | 2 | 1 | DHB | 1 |
| 43 | 43 | D2-4 | DHB | positive | 25 | 32 | 70 | 3.250000 | 350 | 2DG | nan | 2022-09-16_21h32m21s | 22-01-25_HTprometex_D2-4_A32_ss25_RF70_CT350_V3.25_20x20_DHBpos | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | DHB | Orbitrap | 98995 | positive | 2022-09-16T21:32:22.032258 | 317 | CoreMetabolome - v3 | No optical image | D | 2 | 4 | DHB | 4 |
| 44 | 44 | G1-1 | NEDC | negative | 25 | 24 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_21h19m45s | 22-01-25_HTprometex_G1-1_A24_ss25_RF70_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T21:19:45.228546 | 176 | CoreMetabolome - v3 | No optical image | G | 1 | 1 | NEDC | 1 |
| 45 | 45 | G1-2 | NEDC | negative | 25 | 26 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_21h20m45s | 22-01-25_HTprometex_G1-2_A26_ss25_RF70_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T21:20:45.571456 | 155 | CoreMetabolome - v3 | No optical image | G | 1 | 2 | NEDC | 2 |
| 46 | 46 | G1-3 | NEDC | negative | 25 | 28 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_21h21m43s | 22-01-25_HTprometex_G1-3_A28_ss25_RF70_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T21:21:43.933636 | 127 | CoreMetabolome - v3 | No optical image | G | 1 | 3 | NEDC | 3 |
| 47 | 47 | G1-4 | NEDC | negative | 25 | 30 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_21h22m10s | 22-01-25_HTprometex_G1-4_A30_ss25_RF70_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T21:22:10.318769 | 134 | CoreMetabolome - v3 | No optical image | G | 1 | 4 | NEDC | 4 |
| 48 | 48 | G1-5 | NEDC | negative | 25 | 26 | 50 | 3.250000 | 250 | Control | nan | 2022-09-16_21h20m16s | 22-01-25_HTprometex_G1-5_A26_ss25_RF50_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T21:20:16.324873 | 159 | CoreMetabolome - v3 | No optical image | G | 1 | 5 | NEDC | 5 |
| 49 | 49 | G1-6 | NEDC | negative | 25 | 26 | 100 | 3.250000 | 250 | Control | nan | 2022-09-16_21h21m14s | 22-01-25_HTprometex_G1-6_A26_ss25_RF100_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T21:21:14.647810 | 64 | CoreMetabolome - v3 | No optical image | G | 1 | 6 | NEDC | 6 |
| 50 | 50 | G2-1 | NEDC | negative | 25 | 26 | 70 | 3.100000 | 250 | Control | nan | 2022-09-16_21h22m39s | 22-01-25_HTprometex_G2-1_A26_ss25_RF70_CT250_V3.1_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T21:22:39.623661 | 154 | CoreMetabolome - v3 | No optical image | G | 2 | 1 | NEDC | 1 |
| 51 | 51 | G2-2 | NEDC | negative | 25 | 26 | 70 | 3.100000 | 350 | Control | nan | 2022-09-16_21h23m03s | 22-01-25_HTprometex_G2-2_A26_ss25_RF70_CT350_V3.1_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T21:23:03.798335 | 88 | CoreMetabolome - v3 | No optical image | G | 2 | 2 | NEDC | 2 |
| 52 | 52 | F1-1 | NEDC | negative | 25 | 24 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h52m05s | 22-01-25_HTprometex_F1-1_A24_ss25_RF70_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T20:52:05.078485 | 119 | CoreMetabolome - v3 | No optical image | F | 1 | 1 | NEDC | 1 |
| 53 | 53 | F1-2 | NEDC | negative | 25 | 26 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h53m10s | 22-01-25_HTprometex_F1-2_A26_ss25_RF70_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T20:53:10.191851 | 57 | CoreMetabolome - v3 | No optical image | F | 1 | 2 | NEDC | 2 |
| 54 | 54 | F1-3 | NEDC | negative | 25 | 28 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h54m16s | 22-01-25_HTprometex_F1-3_A28_ss25_RF70_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T20:54:16.824808 | 49 | CoreMetabolome - v3 | No optical image | F | 1 | 3 | NEDC | 3 |
| 55 | 55 | F1-4 | NEDC | negative | 25 | 30 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h55m11s | 22-01-25_HTprometex_F1-4_A30_ss25_RF70_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T20:55:11.381179 | 98 | CoreMetabolome - v3 | No optical image | F | 1 | 4 | NEDC | 4 |
| 56 | 56 | F1-5 | NEDC | negative | 25 | 26 | 50 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h52m41s | 22-01-25_HTprometex_F1-5_A26_ss25_RF50_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T20:52:41.963661 | 73 | CoreMetabolome - v3 | No optical image | F | 1 | 5 | NEDC | 5 |
| 57 | 57 | F1-6 | NEDC | negative | 25 | 26 | 100 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h53m41s | 22-01-25_HTprometex_F1-6_A26_ss25_RF100_CT250_V3.25_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T20:53:41.671666 | 53 | CoreMetabolome - v3 | No optical image | F | 1 | 6 | NEDC | 6 |
| 58 | 58 | F2-1 | NEDC | negative | 25 | 26 | 70 | 3.100000 | 250 | 2DG | nan | 2022-09-16_20h56m29s | 22-01-25_HTprometex_F2-1_A26_ss25_RF70_CT250_V3.1_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T20:56:29.880708 | 108 | CoreMetabolome - v3 | No optical image | F | 2 | 1 | NEDC | 1 |
| 59 | 59 | F2-2 | NEDC | negative | 25 | 26 | 70 | 3.100000 | 350 | 2DG | nan | 2022-09-16_21h18m57s | 22-01-25_HTprometex_F2-2_A26_ss25_RF70_CT350_V3.1_20x20_NEDCneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | NEDC | Orbitrap | 98995 | negative | 2022-09-16T21:18:57.371195 | 77 | CoreMetabolome - v3 | No optical image | F | 2 | 2 | NEDC | 2 |
| 60 | 60 | I1-1 | 9AA | negative | 25 | 24 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_20h00m50s | 22-01-25_HTprometex_I1-1_A24_ss25_RF70_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:00:50.113421 | 17 | HMDB - v4 | No optical image | I | 1 | 1 | 9AA | 1 |
| 61 | 61 | I1-2 | 9AA | negative | 25 | 26 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_20h01m39s | 22-01-25_HTprometex_I1-2_A26_ss25_RF70_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:01:39.688695 | 22 | CoreMetabolome - v3 | No optical image | I | 1 | 2 | 9AA | 2 |
| 62 | 62 | I1-3 | 9AA | negative | 25 | 28 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_20h02m31s | 22-01-25_HTprometex_I1-3_A28_ss25_RF70_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:02:31.490012 | 15 | CoreMetabolome - v3 | No optical image | I | 1 | 3 | 9AA | 3 |
| 63 | 63 | I1-4 | 9AA | negative | 25 | 30 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_20h06m08s | 22-01-25_HTprometex_I1-4_A30_ss25_RF70_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:06:08.827207 | 42 | CoreMetabolome - v3 | No optical image | I | 1 | 4 | 9AA | 4 |
| 64 | 64 | I1-5 | 9AA | negative | 25 | 32 | 70 | 3.250000 | 250 | Control | nan | 2022-09-16_20h07m39s | 22-01-25_HTprometex_I1-5_A32_ss25_RF70_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:07:39.621241 | 36 | HMDB - v4 | No optical image | I | 1 | 5 | 9AA | 5 |
| 65 | 65 | I1-7 | 9AA | negative | 25 | 30 | 50 | 3.250000 | 250 | Control | nan | 2022-09-16_20h04m40s | 22-01-25_HTprometex_I1-7_A30_ss25_RF50_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:04:40.625729 | 23 | CoreMetabolome - v3 | No optical image | I | 1 | 7 | 9AA | 7 |
| 66 | 66 | I1-8 | 9AA | negative | 25 | 30 | 100 | 3.250000 | 250 | Control | nan | 2022-09-16_20h06m44s | 22-01-25_HTprometex_I1-8_A30_ss25_RF100_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:06:44.865749 | 31 | HMDB - v4 | No optical image | I | 1 | 8 | 9AA | 8 |
| 67 | 67 | I2-1 | 9AA | negative | 25 | 30 | 70 | 3.100000 | 250 | Control | nan | 2022-09-16_20h08m30s | 22-01-25_HTprometex_I2-1_A30_ss25_RF70_CT250_V3.1_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:08:30.432554 | 18 | CoreMetabolome - v3 | No optical image | I | 2 | 1 | 9AA | 1 |
| 68 | 68 | I2-2 | 9AA | negative | 25 | 30 | 70 | 3.250000 | 350 | Control | nan | 2022-09-16_20h09m06s | 22-01-25_HTprometex_opt_I2-2_A30_ss25_RF70_CT350_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | Control | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:09:06.995445 | 29 | CoreMetabolome - v3 | No optical image | I | 2 | 2 | 9AA | 2 |
| 69 | 69 | J1-1 | 9AA | negative | 25 | 24 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h09m46s | 22-01-25_HTprometex_J1-1_A24_ss25_RF70_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:09:46.642219 | 25 | CoreMetabolome - v3 | No optical image | J | 1 | 1 | 9AA | 1 |
| 70 | 70 | J1-2 | 9AA | negative | 25 | 26 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h10m16s | 22-01-25_HTprometex_J1-2_A26_ss25_RF70_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:10:16.060473 | 23 | CoreMetabolome - v3 | No optical image | J | 1 | 2 | 9AA | 2 |
| 71 | 71 | J1-3 | 9AA | negative | 25 | 28 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h10m55s | 22-01-25_HTprometex_J1-3_A28_ss25_RF70_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:10:55.274634 | 23 | CoreMetabolome - v3 | No optical image | J | 1 | 3 | 9AA | 3 |
| 72 | 72 | J1-4 | 9AA | negative | 25 | 30 | 70 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h12m24s | 22-01-25_HTprometex_J1-4_A30_ss25_RF70_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:12:24.217155 | 36 | HMDB - v4 | No optical image | J | 1 | 4 | 9AA | 4 |
| 73 | 73 | J1-5 | 9AA | negative | 25 | 30 | 50 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h11m46s | 22-01-25_HTprometex_J1-5_A30_ss25_RF50_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:11:46.867029 | 24 | CoreMetabolome - v3 | No optical image | J | 1 | 5 | 9AA | 5 |
| 74 | 74 | J1-6 | 9AA | negative | 25 | 30 | 100 | 3.250000 | 250 | 2DG | nan | 2022-09-16_20h12m56s | 22-01-25_HTprometex_J1-6_A30_ss25_RF100_CT250_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:12:56.205870 | 32 | CoreMetabolome - v3 | No optical image | J | 1 | 6 | 9AA | 6 |
| 75 | 75 | J2-1 | 9AA | negative | 25 | 30 | 70 | 3.100000 | 250 | 2DG | nan | 2022-09-16_20h13m50s | 22-01-25_HTprometex_J2-1_A30_ss25_RF70_CT250_V3.1_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:13:50.213547 | 22 | CoreMetabolome - v3 | No optical image | J | 2 | 1 | 9AA | 1 |
| 76 | 76 | J2-2 | 9AA | negative | 25 | 30 | 70 | 3.250000 | 350 | 2DG | nan | 2022-09-16_20h15m15s | 22-01-25_HTprometex_J2-2_A30_ss25_RF70_CT350_V3.25_20x20_9AAneg | ♡EMBL♡ | Jeany Delafiori | Theodore Alexandrov | Homo sapiens (human) | Prostate cancer cells | 2-DG | in vivo | MALDI | 9AA | Orbitrap | 98995 | negative | 2022-09-16T20:15:15.159078 | 16 | CoreMetabolome - v3 | No optical image | J | 2 | 2 | 9AA | 2 |
'datasetId'
Replicate coverage¶
PCA pixel analysis¶
When doing PCA and DE analysis, datasets belonging to the same batch are loaded together using an 'inner join': in other words, we only keep metabolites/annotations that are present in ALL datasets of a given batch. This is done to avoid artifacts in PCA analysis and volcano plots.
In general, keep in mind the following points:
- PCA distances between conditions and replicates are comparable for datasets belonging to the same batch. Thus, you should try to put as many datasets as you can in the same batch.
- However, when annotations of certain datasets are very different (e.g. because you acquired the data using different matrices), then you should consider putting them in a separate batch. Otherwise, not many common metabolites will be left after the 'inner join' done during loading.
- If you notice that not many metabolites are left, then you could consider defining different batches or creating a custom database (see more info here)
Number of intra-cell pixels and ions left after loading (before and after filtering):¶
| Batch | Unique pixels | Unique ions | |
|---|---|---|---|
| 0 | 9AA | 681/681 | 41/41 |
| 1 | DAN | 1529/1529 | 68/68 |
| 2 | DHB | 760/760 | 125/125 |
| 3 | NEDC | 641/641 | 77/77 |
PCA plots¶
The size of the circles represents PCA distances (the bigger the circle, the larger the distance):
- The size of the colored circles represents the distance between the two biological conditions
- The size of the empty circle with solid contour represents the distance between replicates of Control. If the circle is not present, it means that there was only one replicate available
- The size of the empty circle with dotted contour represents the distance between replicates of 2DG. If the circle is not present, it means there was only one replicate available
- You should only compare the size of circles with the same color (i.e. in the same batch), because PCA distances are not comparable between batches.
The best scenario is when both empty circles are inside the colored circle (i.e. the difference between replicates is smaller as compared to the difference between biological conditions).
Differential analysis and volcano plots¶
Markers intensities:¶
To show marker intensities, all datasets are loaded again using an 'outer' join: in other words, all annotations/metabolites that appear at least in one dataset are preserved; and if a metabolite is missing in some of the datasets, its intensity will be set to zero.
Markers found in at least one of the datasets (in alphabetical order):
| Marker name | Formula and link to plots | |
|---|---|---|
| 0 | AMP | C10H14N5O7P-H |
| 1 | Adenine | C5H5N5-H |
| 2 | Adenine | C5H5N5+Cl |
| 3 | Cytosine | C4H5N3O-H |
| 4 | Glutathione | C10H17N3O6S-H |
| 5 | Guanine | C5H5N5O-H |
| 6 | Guanine | C5H5N5O+Cl |
| 7 | Thymine | C5H6N2O2-H |
| 8 | Uracil | C4H4N2O2-H |
| 9 | asparagine | C4H8N2O3+Cl |
| 10 | aspartate | C4H7NO4-H |
| 11 | aspartate | C4H7NO4+Cl |
| 12 | citrate | C6H8O7-H |
| 13 | fructose-bisphosphate | C6H14O12P2-H |
| 14 | fumarate | C4H4O4-H |
| 15 | fumarate | C4H4O4+Cl |
| 16 | glucose | C6H12O6+Cl |
| 17 | glucose | C6H12O6-H |
| 18 | glucose-phosphate | C6H13O9P-H |
| 19 | glutamate | C5H9NO4-H |
| 20 | malate | C4H6O5-H |
| 21 | malate | C4H6O5+Cl |
| 22 | oleate | C18H34O2-H |
| 23 | palmitate | C16H32O2-H |
| 24 | succinate | C4H6O4-H |
| 25 | succinate | C4H6O4+Cl |
| 26 | taurine | C2H7NO3S-H |
Marker: C10H14N5O7P-H, AMP
Raw intensities (C10H14N5O7P-H, AMP)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C10H14N5O7P-H, AMP)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C10H14N5O7P-H, AMP)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C5H5N5-H, Adenine
Raw intensities (C5H5N5-H, Adenine)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C5H5N5-H, Adenine)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C5H5N5-H, Adenine)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C5H5N5+Cl, Adenine
Raw intensities (C5H5N5+Cl, Adenine)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C5H5N5+Cl, Adenine)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C5H5N5+Cl, Adenine)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C4H5N3O-H, Cytosine
Raw intensities (C4H5N3O-H, Cytosine)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C4H5N3O-H, Cytosine)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C4H5N3O-H, Cytosine)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C10H17N3O6S-H, Glutathione
Raw intensities (C10H17N3O6S-H, Glutathione)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C10H17N3O6S-H, Glutathione)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C10H17N3O6S-H, Glutathione)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C5H5N5O-H, Guanine
Raw intensities (C5H5N5O-H, Guanine)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C5H5N5O-H, Guanine)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C5H5N5O-H, Guanine)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C5H5N5O+Cl, Guanine
Raw intensities (C5H5N5O+Cl, Guanine)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C5H5N5O+Cl, Guanine)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C5H5N5O+Cl, Guanine)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C5H6N2O2-H, Thymine
Raw intensities (C5H6N2O2-H, Thymine)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C5H6N2O2-H, Thymine)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C5H6N2O2-H, Thymine)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C4H4N2O2-H, Uracil
Raw intensities (C4H4N2O2-H, Uracil)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C4H4N2O2-H, Uracil)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C4H4N2O2-H, Uracil)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C4H8N2O3+Cl, asparagine
Raw intensities (C4H8N2O3+Cl, asparagine)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C4H8N2O3+Cl, asparagine)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C4H8N2O3+Cl, asparagine)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C4H7NO4-H, aspartate
Raw intensities (C4H7NO4-H, aspartate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C4H7NO4-H, aspartate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C4H7NO4-H, aspartate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C4H7NO4+Cl, aspartate
Raw intensities (C4H7NO4+Cl, aspartate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C4H7NO4+Cl, aspartate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C4H7NO4+Cl, aspartate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C6H8O7-H, citrate
Raw intensities (C6H8O7-H, citrate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C6H8O7-H, citrate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C6H8O7-H, citrate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C6H14O12P2-H, fructose-bisphosphate
Raw intensities (C6H14O12P2-H, fructose-bisphosphate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C6H14O12P2-H, fructose-bisphosphate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C6H14O12P2-H, fructose-bisphosphate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C4H4O4-H, fumarate
Raw intensities (C4H4O4-H, fumarate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C4H4O4-H, fumarate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C4H4O4-H, fumarate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C4H4O4+Cl, fumarate
Raw intensities (C4H4O4+Cl, fumarate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C4H4O4+Cl, fumarate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C4H4O4+Cl, fumarate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C6H12O6+Cl, glucose
Raw intensities (C6H12O6+Cl, glucose)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C6H12O6+Cl, glucose)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C6H12O6+Cl, glucose)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C6H12O6-H, glucose
Raw intensities (C6H12O6-H, glucose)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C6H12O6-H, glucose)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C6H12O6-H, glucose)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C6H13O9P-H, glucose-phosphate
Raw intensities (C6H13O9P-H, glucose-phosphate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C6H13O9P-H, glucose-phosphate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C6H13O9P-H, glucose-phosphate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C5H9NO4-H, glutamate
Raw intensities (C5H9NO4-H, glutamate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C5H9NO4-H, glutamate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C5H9NO4-H, glutamate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C4H6O5-H, malate
Raw intensities (C4H6O5-H, malate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C4H6O5-H, malate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C4H6O5-H, malate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C4H6O5+Cl, malate
Raw intensities (C4H6O5+Cl, malate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C4H6O5+Cl, malate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C4H6O5+Cl, malate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C18H34O2-H, oleate
Raw intensities (C18H34O2-H, oleate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C18H34O2-H, oleate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C18H34O2-H, oleate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C16H32O2-H, palmitate
Raw intensities (C16H32O2-H, palmitate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C16H32O2-H, palmitate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C16H32O2-H, palmitate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C4H6O4-H, succinate
Raw intensities (C4H6O4-H, succinate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C4H6O4-H, succinate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C4H6O4-H, succinate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C4H6O4+Cl, succinate
Raw intensities (C4H6O4+Cl, succinate)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C4H6O4+Cl, succinate)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C4H6O4+Cl, succinate)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Marker: C2H7NO3S-H, taurine
Raw intensities (C2H7NO3S-H, taurine)¶
The following plot shows the raw intensities of intra-cellular pixels:
95% percentile (C2H7NO3S-H, taurine)¶
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
Detectability (C2H7NO3S-H, taurine)¶
Detectability is defined as 'Percentage of intracellular pixels where the marker is detected with intensity above the threshold 0 (you can set this parameters in the config file).
In the following heatmap, a cross indicates that the marker was not annotated in any of the datasets (for that specific condition and choice of optimization parameters):
In the following plot, dots represent values across replicates. The number of dots can vary because the marker is not always annotated in all of the datasets:
